ROIs

Todo

Introductory narrative (2-3 sentences): What ROIs are provided and why? Are they intended for most users, or only for ROI-based analyses?

Todo

Add an overview figure showing all ROI sets on a brain (e.g., glass brain or inflated surface with ROIs color-coded by set).

Overview of all available ROI sets on an example subject. (placeholder — replace with actual figure)

Available ROI Sets

Todo

For each ROI set below, write a short description (2-3 sentences) covering what it is, how it was defined, and when a user would use it. Add or remove subsections as needed. Cross-reference the source page where applicable.

Atlas-based ROIs

Todo

Which atlas-based ROIs are provided (e.g., Glasser parcellation, DKT, Schaefer)? Brief description of each, which regions are included, and a figure.

Atlas-based ROI parcellation. (placeholder — replace with actual figure)

Retinotopy-derived ROIs

Todo

Which visual area ROIs come from retinotopic mapping (V1, V2, V3, …)? Brief description + figure showing them on a flatmap or inflated surface. Cross-reference Retinotopy.

Retinotopy-derived visual area ROIs on an inflated surface. (placeholder — replace with actual figure)

Localizer-derived ROIs

Todo

Which category-selective ROIs come from localizers (FFA, PPA, EBA, …)? Brief description of how they were defined (individual thresholding, etc.) + figure. Cross-reference Functional Localizers.

Localizer-derived category-selective ROIs. (placeholder — replace with actual figure)

Available Spaces

Todo

Which spaces are the ROI masks provided in? Are all ROI sets available in all spaces, or only some?

File Organization

Todo

Paste the actual file tree from derivatives/rois/.

derivatives/rois/
└── ... (placeholder — fill with actual file listing)

Loading ROIs

Todo

Provide minimal code examples once file paths and naming are finalized. Show how to load an ROI mask and apply it to beta estimates (cross-ref GLMsingle Beta Estimates).